*SrSSKJr SSKJr SSKJr SSKrSSKJr SSKJ r SSKJ r SS KJ r SS KJ r SSKJ r SS KJr SSKJ r SS KJr SS KJr SSKJr SSKJr SSKJr SSKrSrSrSr SSjr!SSjr"SSjr#Sr$Sr%Sr&Sr'Sr(Sr)g)z,Common helper methods for Genomics commands.)absolute_import)division)unicode_literalsN) DecodeError)encoding) exceptions) extra_types)transfer)apis)log) properties)yaml)resource_printer)fileszgs://cVUVs/sHn[R"US9PM sn$s snf)zConverts a list of strings to the API JsonValue equivalent. Args: values: the string values to be converted Returns: An equivalent list of JsonValue strings  string_value)r JsonValuevaluesvs 4lib/googlecloudsdk/api_lib/genomics/genomics_util.pyInfoValuesToAPIr+s(:@ @A+  Q / @@ @s&cDUVs/sHoRPM sn$s snf)zConverts a list of strings to an API JsonValue equivalent. Args: values: the list of JsonValue strings to be converted Returns: An equivalent list of strings rrs rInfoValuesFromAPIr6s#) )&Q..& )) )scN[R"U/U[RS9 g)zPrints the given resource.) resources print_formatoutN)rPrintr r)resourcers r PrettyPrintr"As  ''c0[R"SU5$Ngenomics) core_apisGetClientInstanceversions rGetGenomicsClientr+I  $ $Z 99r#c0[R"SU5$r%)r'GetMessagesModuler)s rGetGenomicsMessagesr/Mr,r#cd[RRRR SS9$)NT)required)r VALUEScoreprojectGetr#r GetProjectIdr7Qs(      ' ' + +T + ::r#c,UR[5$)N) startswith GCS_PREFIX)paths r IsGcsPathr<Us  $$r#c [U5(a[R"SS9nUR5 [ U5upE[ R "SS5nURXES9n[RRURSS9nURRXxS9 AURn[*R,"U5n U (d%[ R""S R%U55e[.R0"U[2R4"U 55n U $![Ra?n [ R""S R%U[&R("U 555eS n A ff=f![6[8[2R:4am [.R<"X5n U $![6[>4a?n [ R""S R%U[&R("U 555eS n A ff=ff=f) aqReads a YAML or JSON object of type message from path (local or GCS). Args: path: A local or GCS path to an object specification in YAML or JSON format. message: The message type to be parsed from the file. client: The storage_v1 client to use. Returns: Object of type message, if successful. Raises: files.Error, genomics_exceptions.GenomicsInputFileError F)deletestoragev1)bucketobjectT) overwrite)downloadz-Unable to read remote file [{0}] due to [{1}]NzEmpty file [{0}]zGPipeline file [{0}] is not properly formatted YAML or JSON due to [{1}]) r<tempfileNamedTemporaryFileclose_SplitBucketAndObjectr'r.StorageObjectsGetRequestr DownloadFromFilenameobjectsr5apitools_exceptions HttpErrorgenomics_exceptionsGenomicsInputFileErrorformatsix text_typerReadFileContentsrPyValueToMessagerload ValueErrorAttributeErrorYAMLParseError JsonToMessager) r;messageclienttfrAobjstorage_messages get_requestrDein_textresults rGetFileAsMessagereYst__  $ $E 2BHHJ'-KF 229dC";;<#K'""++BGGt+Dh nn8  77D  " "4 ('   4 4!!$' )) 9  & &w '0B CF -1  ( ('  6 6 9 @ @CMM!$ & ''' nd&9&9 :99%%g7f -  $9 6 6 cmmA&67 9999sC)AD':+E='E:;:E55E:=H F66H:HHH c/nUcU$[[R"U55Hup4URU"X4S95 M U$)N)keyvalue)sortedrS iteritemsappend)argdictr\rdkrs r!ArgDictToAdditionalPropertiesListrnsC & _ MS]]7+,da MM'a)*- -r#cU[[5SRS5RSS5n[U5S:wa%[R "SR U55eU$)zHSplit a GCS path into bucket & object tokens, or raise BadFileException.N/z.[{0}] is not a valid Google Cloud Storage path)lenr:stripsplitcalliope_exceptionsBadFileExceptionrR)gcs_pathtokenss rrHrHs_ C O$ % + +C 0 6 6sA >&[A  . .8??I KK -r#c U(dgSRS/UVs/sHnSRX/5PM sn-5$s snf)a6Returns the comma separated list of field names referenced by the command. Args: referenced_fields: A list of field names referenced by the format and filter expressions. prefix: The referenced field name resource prefix. Returns: The comma separated list of field names referenced by the command. N, nextPageToken.)join)referenced_fieldsprefixfields rGetQueryFieldsrsJ   ?#:KL:K388VO,:KLM NNLs? )json)r@)*__doc__ __future__rrrrE#apitools.base.protorpclite.messagesrapitools.base.pyrrrNr r googlecloudsdk.api_lib.genomicsrPgooglecloudsdk.api_lib.utilr r'googlecloudsdk.calliopervgooglecloudsdk.corer r rgooglecloudsdk.core.resourcergooglecloudsdk.core.utilrrSr:rrr"r+r/r7r<rernrHrr6r#rrs 3&';%>(%M9E#*$9*  A*::;%2jNr#