FSrSSKJr SSKJr SSKJr SSKrSSKJr SSK J r SSK J r SS K J r SS K Jr SS KJr SS KJr SS KJr SSKJr SSKJr SSKJr SSKJr SSKrSrSr"SS\5r Sr!"SS\RD5r#g)z5Implementation of gcloud lifesciences pipelines run. )absolute_import)division)unicode_literalsN) lifesciences) exceptions)lifesciences_util) arg_parsers)base)concepts) yaml_data) labels_util)concept_parsers)log) properties)fileszgoogle/cloud-sdk:slimz gcloud-sharedc \rSrSrSrSrSrg)_SharedPathGenerator*cXlSUlg)N)rootindex)selfrs )lib/surface/lifesciences/pipelines/run.py__init___SharedPathGenerator.__init__,sIDJclU=RS- slS[URUR4-$)Nz/%s/%s%d)r SHARED_DISKr)rs rGenerate_SharedPathGenerator.Generate0s)JJ!OJ dii< <S?9 g)@zArgs is called by calliope to gather arguments for this command. Args: parser: An argparse parser that you can use to add arguments that go on the command line after this command. Positional arguments are allowed. zlifesciences.locationz --locationz.The Google Cloud location to run the pipeline.T)requiredz--pipeline-filezA YAML or JSON file containing a Pipeline object. See [](https://cloud.google.com/life-sciences/docs/reference/rest/v2beta/projects.locations.pipelines/run#pipeline) )helpz--command-linezpCommand line to run with /bin/sh in the specified Docker image. Cannot be used with --pipeline-file.)categoryrBz--docker-imagezsA Docker image to run. Requires --command-line to be specified and cannot be used with --pipeline-file.)rCdefaultrBz--inputsz NAME=VALUEa8Map of input PipelineParameter names to values. Used to pass literal parameters to the pipeline, and to specify input files in Google Cloud Storage that will have a localCopy made. Specified as a comma-separated list: --inputs file=gs://my-bucket/in.txt,name=hello)rCmetavartypeactionrBz--inputs-from-filez NAME=FILEaMap of input PipelineParameter names to values. Used to pass literal parameters to the pipeline where values come from local files; this can be used to send large pipeline input parameters, such as code, data, or configuration values. Specified as a comma-separated list: --inputs-from-file script=myshellscript.sh,pyfile=mypython.pyz --outputsa Map of output PipelineParameter names to values. Used to specify output files in Google Cloud Storage that will be made from a localCopy. Specified as a comma-separated list: --outputs ref=gs://my-bucket/foo,ref2=gs://my-bucket/barz --loggingaThe location in Google Cloud Storage to which the pipeline logs will be copied. Can be specified as a fully qualified directory path, in which case logs will be output with a unique identifier as the filename in that directory, or as a fully specified path, which must end in `.log`, in which case that path will be used. Stdout and stderr logs from the run are also generated and output as `-stdout.log` and `-stderr.log`.z --env-varsz8List of key-value pairs to set as environment variables.)rCrErFrBz --disk-sizeNzThe disk size(s) in GB, specified as a comma-separated list of pairs of disk name and size. For example: --disk-size "name:size,name2:size2". Overrides any values specified in the pipeline-file.z --preemptible store_truezWhether to use a preemptible VM for this pipeline. The "resource" section of the pipeline-file must also set preemptible to "true" for this flag to take effect.)rCrGrBz--run-idzTHIS ARGUMENT NEEDS HELP TEXT.)hiddenrBz--service-account-emailrDzThe service account used on the Compute Engine VMs that run the pipeline. If unspecified, defaults to the Compute Engine service account for your project.)rDrBz--service-account-scopesSCOPEzList of additional scopes to be made available for this service account. The following scopes are always requested: https://www.googleapis.com/auth/cloud-platform)rErFrDrBz--machine-typez n1-standard-1z=The type of VirtualMachine to use. Defaults to n1-standard-1.z--zonesZONEaList of Compute Engine zones the pipeline can run in. If no zones are specified with the zones flag, then zones in the pipeline definition file will be used. If no zones are specified in the pipeline definition, then the default zone in your local client configuration is used (and must be specified). For more information on default zones, see https://cloud.google.com/compute/docs/gcloud-compute/#set_default_zone_and_region_in_your_local_client)rErFrBz --regionsREGIONaList of Compute Engine regions the pipeline can run in. If no regions are specified with the regions flag, then regions in the pipeline definition file will be used. If no regions are specified in the pipeline definition, then the default region in your local client configuration is used. At least one region or region must be specified. For more information on default regions, see https://cloud.google.com/compute/docs/gcloud-compute/#set_default_zone_and_region_in_your_local_clientz --networkaThe network name to attach the VM's network interface to. The value will be prefixed with global/networks/ unless it contains a /, in which case it is assumed to be a fully specified network resource URL. If unspecified, the global default network is used.z --subnetworkaThe subnetwork to use on the provided network. If the specified network is configured for custom subnet creation, the name of the subnetwork to attach the instance to must be specified here. The value is prefixed with regions/*/subnetworks/ unless it contains a /, in which case it is assumed to be a fully specified subnetwork resource URL. If the * character appears in the value, it is replaced with the region that the virtual machine has been allocated in.z--boot-disk-sizezThe size of the boot disk in GB. 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[LRN"S!5e=f)%aThis is what gets called when the user runs this command. Args: args: argparse.Namespace, All the arguments that were provided to this command invocation. Raises: files.Error: A file argument could not be read. LifeSciencesError: User input was invalid. HttpException: An http error response was received while executing api request. Returns: Operation representing the running pipeline. 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